Season 1

The Detective Boys meet Takagi in a jewelry store, and soon after, they witness the store being robbed. They chase him to a nearby roof, which he jumps off of, killing himself. Conan notices several suspicious things about the incident, leading the police to believe that it wasn't as simple of a case as it first appeared to be.

The Detective Boys and Conan solve the case and show the police that they were wrong about almost everything that happened.

The Detective Boys and Conan meet Yuriko an orphaned girl. She is a potential heiress to her great-grandfather's fortune, but she must first solve a riddle.

The Detective Boys parallel the legend of the Minotaur and Theseus by using the yarn from their clothes to navigate the labyrinth.

One day a man was jogging and finds a dead body. He calls the Ambulance but worried about the man's life, decides to run to the nearest bus station. Because of his actions he is considered the main suspect.

Conan, Heiji, Ran, and Kazuha are at Dogo Hoshikawa’s magic show.

Tenko’s brutal murder is investigated. Conan and Heiji now realize how the murder was executed.

Conan recreates the trick used by the killer, disappearing and reappearing in front of everyone in the creepy long hallway.

Tamanosuke and his troupe are preparing a show but Renge Kataoka's father, the actress, forbids his daughter to attend the show. Tamanosuke is in trouble and asks Ran to replace the girl until it was able to convince her father to let her play.

The time of show is getting closer, Tamanosuke decides to play the show without Renge Kataoka, the actress, by replacing Ran as the girl before the end of the show. Thus Conan manages to find out who has kidnapped the girl and free just in time to enable it to play its role in the show.

The detective boys are hiking on a trip to find stag beetles on a mountain forest. . Later Conan receives a phone call from Ran and Sonoko who tells "Shinichi" that a burglar tried to steal Sonoko's bag. Since it relates to a murder, Conan investigates the picture sent by Sonoko to learn about the dying message. While at it, he helps the Detective Boys solve one of Agasa's code.

Later Conan solves both codes and finds out that Ran and Sonoko are riding with the murderer.

Kogoro is invited by TV producer Ryoko Inoue to share some of his case stories. He meets scriptwriters Joji Yagami, Morio Kouda, and Akira Sakuma. During negotiations, Joji drops dead from poison laced in his coffee.

Conan and the Detective Boys are invited by their classmate Yuka Konno to come to her house to investigate her pet budgerigar.

A man is being haunted by a ghost, since exorcisms did not work they want Kogorou to solve the case. The clue is a card that says the fifth ghost will kill them unless they repent their sins. Since the time that card was sent, the master installed a door that needs a pin code and fingerprint scan to access the top floor. The master, lady, and the installer of the door are friends who are hiding a secret about the sin.

Afterwards, the master is found dead from a heart attack. Conan realizes he must've seen something that was impossible causing him that much of a fright.

They decide to investigate the four workers of the mansion along with the accident that took place thirteen years ago.

A small three-story house is put up for rent in the neighbourhood and the Detective Boys decide to pass by it on the way home from school. Haibara tricks the real estate agent into giving them a tour of the inside and Conan notices that he could see Mouri's detective agency from the third floor window. The next day, they discover the house has been sold to an old couple and Conan finds them suspicious.

Conan, Ran, and Kogorou go to the mythical village of Izumo. there they meet Eiko Ezumi, an employee at the Grand Shrine, and learn that she is to marry a rotten businessman, Kouji Wanibuchi - founder and president of his own company. Later they meet her childhood friend, Ryousuke Fukuma and it comes to a rocky start when Kogorou yells at him. The next day, Eiko's fiancee is found dead with his Sword of the Eight-Headed Snake he was carrying goes missing.

Conan proves that Eiko and Ryou's alibis were to protect the other.

The Detective Boys are at Agasa's house when they happen to find a letter from Agasa's first love. Apparently they are supposed to meet every decade but was unable to because Agasa could not solve the code from the letter.

After Conan re-examines the hint, he realizes that the sounds were animal noises pronounced by the English.

Ayumi and other young detectives saw an olive tree on which lives a family of caterpillars. In the same area has been committed murder and a boy, despite having seen the face of the murderer, makes no witness to the police. Conan, talking with the boy, unable to understand why the boy do not want to talk with authorities.

Mouri, and Conan are checking out costumes for Mouri's one day of being a chief firemen. Later they meet people attending a costume party. While walking home, they find a police car in front of the house and meet the people from the costume shop earlier, realizing the host has been murdered.

Kogoro is asked to help News Reporter Rena Mizunashi who is experiencing persistent Knock, Knock, Ginger every Saturday for two months. Conan places a transmitter device outside the door and investigates.

Ran receives an anonymous "love" letter that has Conan worried.

Mitsuhiko tells the Detective Boys that Shouko Amemiya, a girl that strongly resembles Haibara, is missing. Conan considers the possibility that the Black Organization kidnapped her and investigates.

From Amemiya's strange behavior the Detective Boys head to a garage where they find kittens Amemiya had been tending. Unable to find Amemiya, they investigate the area around the garage and realize there had been a recent car accident.

A client named Atsushi Misumi asks Kogoro to search for his girlfriend, Ami. Deducing from her last words, they realize Ami is waiting for Misumi at the place where they first met. They are driven by Misumi to Gunma Prefecture where they find Ami in a sealed up car dead.

After investigating, Conan realizes how the murder was done.

Mōri, Ran, and Conan are at a café when they run into Takagi who is aiming to pick up girls. Meanwhile, he finds Sato there doing the same. After a tense date with two strangers, Conan realizes from the conversation that a boy home alone is in danger. When they arrive at their house, the boy has been kidnapped. The kidnapper leaves an email demanding money.

After solving clues Takagi leaves suddenly and Conan reveals who the kidnapper is.

Kogoro and Conan visits a famous author named Osamu Umezu in order to have his book signed. Later they spot Osamu's secretary, Mikami Touru, running to Osamu's house. They learn that Mikami that Osamu is not answering his phone calls and he was going to check up on him. They accompany him to Osamu's apartment and find Osamu dead. Evidence suggests it was suicide but Kogoro notices blood on the trash bin and reveals that it was a murder.

Conan and Ran pass by a dog park and befriend two couples whom each own a dogs; one is named Musashi and the other is named Coeur. Yoriko Nakatani, the neighbor of the owner of Musashi, the Tsutsumi couple, asks Kogoro to investigate the dog Musashi who acts aggressively to her. Conan and Ran disclose they believe she did something to upset the dog, causing her to leave. The next day, Nakatani's mother in law is seemingly killed by Musashi when his teeth marks are found on her throat.

A free-lance writer comes to do a story about the Detective Boys. They go along with their teacher to the writer's apartment, but when they arrive they find that he has been bludgeoned to death.

Three out of the four messages on the answering machine are suspect, but in each one there is something going on which helps them verify the time and place of the call

Aya, who made a promise with Shinichi, comes back to his house to ask help for a case involving her grandma and her daughter that died at the age of 17.

The waitress of Poirot Cafe, Azusa Enomoto, reported she received strange messages from a boy, suggesting he might be kidnapped or trapped in a location without food and water. The only way to find him is by reading his text messages. The boy only knows how to send, but does not know how receive. Conan must put the clues he gives together to find out his location.

A man named Sasamoto is nearly killed by a falling cinder block. He believes that it's his old college friend, Hikage, who disappeared 3 years ago, but since has written a murder prophesy novel where he kills his 3 friends from college

The Detective Boys visit a Kamen Yaiba Stunt Show. The director, Shinji Fukamachi, and assistant director, Hidehiko Nakasato, scold the stunt driver, Kengo Rikiishi, for doing such a dangerous stunt with the car. Later, Kengo dies on impact and the Detective Boys investigate

Kogoro and Conan are brought to an apartment to examine the death of a man named Yamamoto. It is presumed a suicide as evidence project he put a gun in his mouth and firing.

A struggling artist named Daijirou Manaka is nearly killed by a falling I beam. While he's lying in the hospital Takagi and the Detective Boys go through his bag and find his license, a rope, a pair of gloves, and a suicide note. Daijirou wakes up and when Takagi asks him about the bag he claims to have amnesia, but Conan notices he is lying.

The Junior Detective Club are at the beach digging up clams. Soon they encounter a college group of students on similar excursion. Later, however, one of the college boy is found dead from poisoning in the car in which they had ridden

Conan is convinced that this is murder and, with the help of Detective Boys, recovers evidence to confirm his theory and the offender is arrested.

Kogoro is asked by a man to solve a coded text message from his daughter since she refused to tell him the meaning of the text message.

Sonoko, Ran, Eisuke and Conan were hiking to Sonoko's mountain villa when they discovered the bridge leading to the lodge had collapsed due to disrepair. Out of range of mobile phone signals, they went to a neighbouring villa to request the use of the house phone. They learned that it was recently bought over by a music group "Dorcus" as a den for composing new music. The band members revealed that they got the villa dirt cheap as it was supposed to be haunted.

Inspector Misao Yamamura arrived to investigate. Conan also tries to gather clues to help, but is limited to what he can do when a sneaky Eisuke starts to spy and watch him. Conan has to use different tactics so he won't seem suspicious to him.

They make a stop by a famous Rakugo actor's restaurant, Meguro. The Rakugo actor, Ichimatsu, helps out at this shop with Meguro Miya, ex-wife who is also the owner. After the play, Ichimatsu is stabbed and sent to the hospital.

Takagi and Miyamoto poses as a bride and groom in order to catch a serial killer/burglar who had threatened to kill the real bride and groom.

A famous magician hires Kogoro to keep watch on his staff members, as he believes one of them may be out to kill him.

Conan fishes around for clues in hopes of finding the true culprit. By the short trip close to the stage, Conan got some clues to resolve the case. After gaining info, he learns who's behind the trick, and exposes the true mastermind behind the death of the magician.

Conan, Ran, Mouri, and Sonoko travel to Shikoku to see the kabuki play Phantom of the Konpira. It is a play based on Phantom of the Opera. Things start to mimic the play.

A man buys a ticket to see a movie, which is a sequel to another he and his friends have seen in the past. He gives his ticket to one of his friends, then leaves, but clues he has left behind leads Conan to believe that he has more on his mind.

Manda, a well-known author, is greeted by his editor who needs his manuscript. He tells him that he is almost done and the editor goes and waits in the hotel hallway. Manda sneaks by in a disguise and goes to Haramoto's house, a man who has been ghost writing for Manda. Haramoto gives Manda the script and then tells him about a new mystery he is planning to unveil once Manda introduces him to the right people. Manda kills Haramoto with a vase and steals the detective story before returning to his hotel room.

Genta hits a baseball through the window of Haramoto's house and breaks a vase. They go inside to apologize and find Haramoto dead. Conan realizes that the victim must have known the killer, and Manda is acting suspicious especially when he interrupts the housekeeper when she mentions the mystery Haramoto was working on.

A murder occurs in an apartment. The victim is a famous detective author. A card left in the scene shows that the somebody who called himself as character of the author's detective novel took the life of the author. Two suspects were identified: the guard of mansion who likes to drink despite author telling him not to, and the editor of the publishing company who claimed that the author was alive when he left the room. After finding evidence through sushi, the culprit was revealed to have done it out of love for the author's mystery

Sonoko brought Ran, who in turn brought Conan, to visit the site in the countryside used as location in the filming of a well-received romantic TV series, where the lead actress tied a red handkerchief to a tree branch to enable her lover to find her.

The murder investigation narrowed to three suspects who were recent arrivals at the nearby inn. Conan deduced the culprit and the cause of the murder.

The Junior Detective Club visited An overly strict man, since Ayumi and Mitch suggested to interview him. Later, however, the Club Crews just have seen that the overly strict man is accused of murdering a woman. Is it murder or is it self-defense? Conan must investigate and figure out the truth.

The teacher of the Detective Boys decides to give the class a mental test. Conan is called by the teacher so the class must solve it without him.

The Detective Boys are doing a book report when Ayumi notices that the last page to her book, Alec's Adventure, has been torn off. Conan and Ayumi decide to search for Tsukasa Naito, the one who burrowed out the book last.

A rockstar named Roku Itakagi has been missing for the past few days. A young boy named Takumi Hashiratani claims that on New Year's Day, he witnessed a man carrying Itakagi in a bag and throwing him over a bridge.

While investigating, they learn that Itakagi's band logo was of a snake with nails piercing through it. After questioning a tattooist, they learn that the tattoo was new and only three people have gotten it.

Eisuke asks Kogoro to investigate a mystery and believes it is crime related to The Red-Headed League

After a thorough investigation, Conan tranquilizes Kogoro and reveals the culprit.

The Detective Boys are at a small ski resort and meet up with four graduate students who are building a snowman for an art project. Later that evening, Sakuko Kokura, one of the graduate students, become lost in the blizzard and the two groups begin their search for her. Conan finds the Kokura dead at the bottom of a cliff in a lake. The police declares that Kokura's death was a snowboarding accident. Conan notices that the body is missing a hat, goggles, and gloves and believes that she was murdered and one of the graduate students is the culprit.

Conan realizes how the murder was done and gathers the suspects along with inspector Misao Yamamura.

The Junior Detective League head to a pond to witness animal control officers attempting to capture an alligator snapping turtle that is loose in the wild.

Takeyori Oikawa claims that the Phantom Thief Kid is targeting his painting which is to be unveiled to the world live that day. The painting is a final part of a set of four. He hires Kogoro Mori to protect the painting from Kid.

After a thorough investigation, Conan concludes there was never a painting behind the cloth and that it was suspended by a fishing line.

Kogoro takes Ran Mori and Conan to an onsen in a rental car after being given a special deal. Kogoro then receives a call from Inspector Megure who reveals that a bomber called the police station to tell them a bomb was placed on Kogoro 's car and will detonate when his speed goes below twenty km/h.

Conan's class finds a wallet with a message from Ran ten years ago. Conan shares the story of how it got there by explaining the adventure he had in the past.

Shinichi solves the riddle and heads to the school and finds the next riddle on a stop sign. Back in the present time, Conan realizes what the riddle actually means.

Eri Kisaki is visited by Ran and Conan who came to remind her it is the anniversary of her first date with Kogoro

Kogoro takes Conan out to look for a restaurant in the city and witnesses a hit and run resulting in two pedestrians being injured. A witness reveals he saw the car waited for those two before speeding into their direction and Conan concludes it was an attempted murder.

Agasa takes the Junior Detective League to a cheesecake bakery. Genta however decides to remain in the underground parking lot and continues to kick a soccer ball against a wall. When Genta hears a strange sound, he misses his kick and subsequently losses balance and falls on his head causing him to lose consciousness

The police gather the three suspects together where Conan reveals the culprit

Kogoro, Ran, and Conan are in a mall when a murder occurs on the third floor. The police arrive and seal the mall preventing people from leaving the third floor and preventing public access to the mall.

Kogoro, Ran, Conan, Heiji Hattori, and Kazuha Toyama are at a festival when a monk asks them to solve a case of a disappearing body at the temple.

A hostess named Hiroko Inoue is found dead in her home by Osamu Kitzuka, a colleague of Inoue's to be husband Akira Taokaoka. Kitzuka had a planned meeting with Taokaoka on that day and was the reason he found the body. As Kogoro and Conan investigate, the police conclude it to be a random burglary after Taokaoka's alibi proves he was at Fukushima Prefecture during the time of Inoue's death.

Agasa takes the Junior Detective League camping, they end up being stranded in the middle of the woods. They decide to ask for lodgings from a house owned by an elderly woman named Iwae Tanaka. At the same time, Akane Ooba and her two hosts, Raito Adachi and Fuuga Kahara, also request for lodging and Tanaka complies. That night, Mitch goes to the restroom but sees something horrifying causing him to run back to his room

Tanaka dismisses Mitsuhiko's accusation as his imagination and the police continue their investigation. As Conan investigates he realizes who the murderer is.

Conan and the Junior Detective League run into Amy's neighbor, Yasuyo Akimoto, who is searching for a kind bearded policemen who she ran into multiple times last week. At the police station, they reveal they do not have an officer like that and it was against police regulation to have facial hair.

Hattori tells Conan he found someone that has knowledge on Ethan Hondou's father; However that person is dead but his grandson, Souhei Nishigun, has a photograph of Ethan's father. Conan, Vi , and Agasa travel to Nishigun's apartment and realize that someone has stolen Nishigun's photograph album and deleted the data off his computer.

Nishigun phones all three of his friends to ask what they were doing during the time of the robbery. Conan realizes who the culprit is from the phone calls and reveals the culprit.

Conan and Vi rescue a kitten from a tree and return him to his owner, Tamotsu Ishigami, the owner of a local café. A woman barges into the café exclaiming she found her boss, Kenzo Kanemaru, dead.

Kogoro is invited to attend an interview of the mystery book writer Masataka Moroguichi. The next day, Moroguichi is found dead from consumption of poison. The room was locked and the key was in Moroguichi's palm; The only opening to the room is a small window which can only fit a small child.

Yoko Okino takes the Junior Detective League to a TV studio for a tour. When they run into Onizuka Satan, a vocalist for a visual kei rock band. The Junior Detective League decide to search for his room to get his autograph.

Eri Kisaki is asked to defend Hiroaki Takeuchi who had been accused of Hit and Run incident. However the evidence suggests it was his wife, Mariko Takeuchi, who was committed the crime.

Hattori tells Conan that he met a better Detective than Conan during his middle school years and reminisces about the case.

Conan, Ran, and Sonoko are visiting a sick friend in the hospital. There they meet Eisuke who tells them he is searching for his long lost sister who looks identical to Rena Mizunashi.

Conan suspects there is a hidden component to Eisuke's story and believes Eisuke is searching for Rena with an ulterior motive.

Kakuzō shows Kogoro a photograph of Tango's body in a pool and points to a white glove Tango is wearing. He reveals that the glove was the same glove their previous butler wore before a car accident killed him, and that Tango's murder occurred on the anniversary of the butler's death.

Conan's investigation leads him to realize how Kakuzō and Tango's murder was accomplished.

Conan contacts Jodie Starling to inform her Eisuke may be searching for Rena and learns from her that Eisuke's father, Ethan Hondō, was a spy for the CIA who were investigating the Black Organization.

The nurse tells Conan that she just remembered Eisuke had surgery for leukemia when he was young, raising the possibility Rena may in fact be his sister.

That night Kusuda is caught sneaking into the nurse's lounge photographing the patient list and the FBI proceed to apprehend him. Kusuda reveals that under his cervical collar are explosives which he will detonate if they attempt to arrest him.

The FBI plan on transporting Rena to another location in one of three identical vans, making the other two decoys. Elsewhere, the Black Organization cause food poisoning throughout restaurants in the city, release poisonous gas in public areas, and start a fire in a local theatre. These incidents cause a large number of people needing medical attention to flow into the hospital.

Rena appears on television while the FBI agents are gathering the small explosives which causes them to gather to Rena's room to investigate

Rena wakes up and knocks Camel unconscious, causing the car to crash. Once freed, she reunites with the other members of the Black Organization.