Season 1

Agasa takes the Detective Boys to watch a parade. They run into Sato, who explains that they received a bomb threat and believe it is related to a bomb case three years ago.

After a thorough investigation, Conan realizes that the mail truck never arrived and realizes the explosion was a distraction and what the true motives for the bombers are.

While walking around town the Detective Boys hear a woman in an apartment scream. They investigate the source of the screaming and find a dead old woman stuffed inside of a Sofa.

Sato reminisces about the bomber case three years ago. Three years ago, a bomber sent a fax to the Tokyo Metropolitan Police containing the location of a bomb in the form of a riddle. Matsuda discovers the bombs location and realizes that the bomb contains a clue an even larger bomb and that the clue is only revealed during the last three seconds before detonation; Matsuda sacrifices his life and allowed the police to locate the second bomb.

Kogoro was invited to make an introduction in an episode of a popular detective TV serial.

During a break in the filming, the star was discovered with his throat slit, with Ruri over the body and her hands bloody. No murder weapon could be found. The immediate suspects were members of the cast, including Ruri and the Nagumo father-son.

Conan and the others search for a missing systems engineer after hearing he may have interacted with a man from the Black Organization.

Afraid the police will confiscate a disk that may contain clues about the Black Organization, Conan uses Kogoro to stall them while he makes a a copy.

Conan is bothered by an encounter with a man connected to the FBI, but he prioritizes analyzing the contents of Itakura's disk at Agasa's place.

Conan impersonates Itakura over the phone and promises Vodka that he'll drop off the software at a train station. Agasa gets a flat tire on the way.

Once arriving at their destination point, Conan reveals that the two people are the jewelry robber. Conan reveals that they hijacked a car as evidenced by the man's inability to handle the foreign car and how coins were found in the ashtray yet the man is a smoker.

The Junior Detective Club accompanied Ayumi to an apartment where she was promised by the owners, to replace her own broken ningyō (traditional Japanese doll), a complete set of 7-tier Hinamatsuri dolls if she could correctly position the dolls.

The police was called into what appears to be a break-in that occurred while all occupants happened to be out.

Kogoro, Ran, and Conan are on a hiking trip. When they reach the observation deck, they witness a man jump off the edge to his death. The body was found at the bottom of the hill and is identified to be Takaya Hirai. Conan investigates the scene and realizes that it was a murder made to look like a suicide.

Jiroo Kuroki calls Kogoro to help his artist sensei, Shizusan Hayakawa's, depression due to the fact he is unable to draw anymore due to his age. During a fishing trip, Hayakawa's maid finds that he had hanged himself on bamboo.

Kogoro, Ran, and Conan attend a professional wrestling match where a wrestler challenges the legendary wrestler Wolf Face. Before the match begins, Wolf Face's challenger, Hyota Nagase is found dead in his room. A secret video camera reveals that a man wearing Wolf Face's mask murdered Hyota.

After re-watching the murder on the camera, Conan realizes how they will find the murderer.

Kogoro, Ran and Conan are in a rental car when it breaks down in a mountain pass in the middle of nowhere. They can't use their cellphones so they find a building and knock and ask to use a phone. It is a massage chair development lab and 3 developers have come up with new prototypes. There is obvious tension between the 3 developers and the President of the company, and things get even more tense when one of the developers stabs the President and drives away, only to crash his car and die.

With security cameras, Conan manages to have some more information. The analysis of the route taken by the alleged offender, allows the boy to understand the facts as they occurred. Conan finds the offender and reveals all through Kogoro.

Yuuichi Kusaka, a client of Kogoro's, is found dead in the park. Conan then sets up a meeting at Kogoro's office where the police and two suspects are gathered. After knocking Kogoro out with a tranquilizing and using his voice changing bow-tie to impersonate Kogoro, Conan reveals the culprit.

Conan and the Detective Boys go to visit Jun, one of their friend who is hospitalized. The boy wants to go to game room and asks his friends to help him sneak out. The children accept and Conan takes the place of Jun in the hospital. A man enters the room, however, believing that Conan is Jun kidnaps Conan and asks for a ransom from Jun's family.

Jun and Detective Boys back to the hospital and so the police understood that Conan was abducted as a hostage instead of Jun. Conan manages to escape from the place where it is locked, go to the hospital and is questioned by the police.

Heiji, Kazuha and a man named Kasukawa are held hostage in an attic of someone's home. Meanwhile, Conan, Ran, and Kogoro are tired of waiting for the two and begin searching for them based on clues from the last phone call.

While held at gunpoint, Heiji sends a modified version of the code to Kogoro and asks him to solve it. Conan manages to solve the code.

Heiji is asked by Kasukawa to investigate a man who is lurking near the house of Ryoko Morozumi. An arsonist, dubbed the Red Horse after the red horse figurines he leaves behind at the fires, has been burning precincts in order.

Ran and Kazuha receive a red horse from Genda on the way home. Kogoro realizes that Genda plans to burn the Mouri Agency with Ran and Kazuha in it and rushes home to find out that Genda had been arrested.

After investigating Genda's home, they find out that there were covert listening devices in planted by Soga and Gondou and realize who the culprit is.

Kogoro, Ran, and Conan are invited by Ran's friend to attend their small birthday party. There, a woman is poisoned from drinking wine, but her wine was given after someone else took a drink already. Conan figures out the trick and proves the culprit to be the murderer.

Ayumi decides that on the Detective Boys camping trip, she will attempt to address Ai Haibara by her first name and to call her "Ai-chan". During the camping trip, they run into four college students who offer them a ride in their campervan to the top mountain to watch fireworks. While driving down the mountain, one of the four college students, Yasumi Shirafuji, is found on the road dead.

After a thorough investigation, Conan finds out how the body was placed on the road and who the murderer is.

Kogoro, Ran, Sonoko, and a sick Conan meet tennis instructor Hiroto Akashi while on a trip to play tennis. It starts to rain heavily and their van is washed away, forcing the group to take shelter at Hiroto’s house nearby. Hiroto introduces his adoptive father, Iwao, to everyone and has made spicy curry for dinner. When Ran goes to get Iwao’s plate, she hears a muffle sound and goes back to the living room. She goes back a second time, at Hiroto’s request, but finds Iwao hanging in his room, bleeding from his mouth.

Conan discovers the truth in Iwao Akashi’s death but loses his voice in the process.

Kogoro is hired by a rich man named Mikio Fujieda to find out who wants to kill him and had been promised ¥10 million after solving the case.

Conan investigates and realizes who the murderer is after receiving a hint from his father.

While waiting for a movie preview to start, Conan and the Detective Boys take a nap at a crew member's house — and discover a murder when they wake up.

Conan narrows the suspects down to three people with a reason to commit the crime. While he lacks evidence, he knows that a missing button is important.

Kogoro and Conan are on their way home when they witness a struggle between two men over a backpack. Later, one of the men fell off the building and died.

Conan and Professor Agasa take Ai to a department store to see a doctor. They encounter four Porsche owners, one of whom is killed shortly afterward.

Security footage gives the surviving three Porsche owners alibis, but Conan has an epiphany after seeing pictures of their cars' interiors.

Conan, Agasa and Ai visit an old friend of Professor Miyano to ask about Ai’s parents. Unfortunately, the man dies while eating a hamburger.

Ai believes the Black Organization killed Dejima, but Conan says it was one of the designers — and that Akemi’s secret remains in the bathroom.

Sonoko invites Ran and Conan to attend a wedding between Shinya Ooga and Akane Katori at the Huis Ten Bosch.

Jodie is planning to leave, and Ran and Sonoko, stunned by the news, decide to throw her a going away party.

Aya's boss threatens to fire her and call the police if the case isn't solved, leaving Ran as her only hope.

Kogoro receives an invitation to a Halloween cruise; the Halloween cruise is famous for hiring guests to star in a horror film.

While walking home from school, Ayumi collides with an unidentified man who has just attacked someone. Later, she notices a strange mark on her hand.

When three suspects without alibis arrive at the police station for questioning, Ai insists Ayumi and her friends observe from a safe distance.

Ran, Conan and Kogoro with the Detective Kids arrive at an inn. There they meet another tourist group and a very rude man (who eventually leaves to another inn). During dinner the owner gets angry reading an article which says the inn is haunted and that's why it's popular.

The owner is taken to the hospital. Kogoro is requested to investigate the case. Even as Kogoro starts his wronog deductions, the kids continue investigating, and find that the road where the knife was leads to an end, meaning that the criminal is someone from the village or one of the tourists.

Kogoro takes Conan to a restaurant, where the waitress called Azusa, asks for his help to find the owner of a lost cell phone.

Conan finds out that most of the numbers are very close to each other, suggesting they might be neighbours.

Ran and Conan were invited to a fishing tournament that was being sponsored by Sonoko's father's company. After hearing that, Genta, Ayumi and Mitsuhiko wanted to come along as well. During the tournament, they met Ayukawa Saori and Masubuchi Takuya, both participants, and Funaki Toshihiko, a freelance writer. On the second day of the tournament, Funaki was found dead by Ran and Sonoko near the lake.

Conan and the Detective Boys continued their investigation.

A seven-year-old movie star by the name of Kazuki Kinukawa comes to the Mori office to try to find his mother who abandoned him at a church.

The forensic team reveals that Kamoshita was knocked on the head with a shower nozzle knocking him unconscious and was later strangled. While the police are watching a videotape found in Kamoshita's room, Conan notices that the movie ended two minutes earlier than the time indicated on the box and realizes how the murder is done.

Sonoko's uncle wants to capture Kaito Kid to improve his fame. Kaito Kid arrives on the scene and seemingly walks on air to investigate the treasure he will steal. Conan investigates and finds out the trick Kaito Kid used.

Ran and Conan run into Sachiko, an acquaintance of Ran's, while shopping. She says she is buying steak for dinner with her lover who's visiting. Later Ran and Conan find that Sachiko is murdered.

Takagi and Sato are on a date at the amusement park. Meanwhile, Shiratori along with several officers are at the amusement park investigating a rumored drug deal involving a dealer in hiding named Asakichi Yakura; At the same time, they intentionally interfere with Takagi's date.

They confront the golfer and discover he is not the owner of the backpack. Conan investigates the backpack's contents and upon sniffing oil from a rag, reveals the owner to the baseballer.

The Detective Boys visit a pet shop and find the owner, Minoru Shirai, dead. They find a Rhinoceros beetle and pamphlets of an insect museum at Gunma Prefecture. Takagi drives the Detective Boys to the museum where they learn that a truck load of Rhinoceros beetles were stolen from the van.

Sonoko, Ran, and Conan go to the school where they discover the real Dr. Araide is back.

Conan solves the case and reveals the culprit was a close friend to the dead student.

An old lady is found dead after a pot falls on her from the top of a building. Officer Chiba is sent to investigate, and Conan helps him figure out who the culprit it really is. The news, of course, comes to a shock to Amy, who just happens to look up the culprit.

Mouri is hired to stalk a man. He follows the man and finds out his attempted murder on a woman. He later flees but falls off a building. Later they find out his twin brother also died at the same time he did.

After interrogating the woman, they learn her boyfriend was a gold digger and that he was spotted talking with the attacker from before. Conan figures out that the two exchanged murder targets so they would not be suspected of the murder.

The Detective Boys are out fishing with Dr Agasa. Since the ship came to pick up the fishing members, one of crews calls their fellow, but the man is found to be poisoned. Remaining Three Crews of the poisoned man got involved to be suspect of the case by the circumstances of the Crime Scene.

Conan investigates and with evidence proves who the culprit is.

Sonoko takes Conan and Ran to the "Candy House", a Hansel and Gretel-themed store specializing in various sweets and candies. The trio then meets three masters who make pastries and puddings: Maeda Gou, Fujino Yasuo and Morimoto Tomomi. Behind the scenes of the shop is their boss, Sachiko Hashigaki, who has stern words for her employees about their performance. When things have cooled down, Sachiko is found bludgeoned to death, her employees are now suspects, but no murder weapon can be found.

Doctor Yokoto Ōwada of the Beika Central Hospital wins the third place prize at a raffle. The raffle makes it his third winning of the week.

Conan and the gang visit a game company where they end up with a tape they believe to be a new edition of a video game. They end up being hunted down by the president of the gaming company, but they don't know why, until they actually put in the tape and see something that puts their lives in danger.

Kogoro, Conan and Ran's meeting with an Okinawa baseball star becomes a murder investigation when they find the player's body by the road.

Suspicious of Motoyama despite his seemingly perfect alibi, Conan looks through Ran’s book of timetables and makes a startling discovery.

Conan and the group meet spider researchers. One of them gets a call, and they rush to the facility on to find their Professor fallen deadly to a poisonous spider. Conan discovers that the spider was already dead before the Professor came into contact with it, and there's a needle on the ear piece, pointing to murder.

For an astronomical observation, Conan and the group went to this pension deep inside the mountain. Other than the pension owner, there were also other three people in the pension, the victim's fiancee and the two magazine staff. As they went to the nearby hill to see the stars, they saw a decayed bones and on top of it they found the dying message and then that night the other man from the magazine staff was killed and left another dying message.

The bones probably belong to a student who disappeared years before. During the night another guest is murdered, and also the telephone lines are interrupted.

The Detective Boys are on a camping trip accompanied by Ran. Later they witness an arguing couple who then leaves. They then set up the tent in the couple's area. Later, the couple returns demanding their place back and the girlfriend decides to let them have it. Later Ran is drugged and kidnapped.

The Detective Boys along with Dr. Agasa went to the Okayama prefecture to visit the museum. Later, they found a group of guys, childhood friends, who gathered to celebrate the marriage of two of them. The Detective Boys noticed a container floating in the water and discover that inside is a secret message.

Conan discovers that the time capsules were created by the group when the children attended elementary school and that they each had buried a container of others, but a boy died shortly after due to an accident.

Conan, Ran, and Kogoro take a trip to a hot springs lodge. One of the guests, Harumi, asks Kogoro to investigate a case from five years ago.

Conan notices that the footprints outside the shrine are too shallow and sees that there is a crack in the ceiling in front of the hot spring; from these and other clues he is able to deduce how the culprit faked an alibi.

Heiji and Kazuha make a surprise visit. Later at a restaurant, Heiji and Kazuha argue for what they should attend tomorrow, a theatre or a baseball game.

Heiji and Conan figured out the trick of Culprit and also found that Kazuha and Ran got trouble with the case.

Heiji won the bet in the previous episode to go see a baseball game and so it's decided that they're all going to the high school baseball finals in Koshien Stadium. But there is a mysterious guy willing to commit a suicide bombing there.

Mouri is targeted by a killer who is after Kimura. Mouri accidentally took his jacket at a bar and now the killer is trying to kill him. Conan finds out that Kimura is not who he seems to be.

Mouri is invited by a granddaughter of a rich household to solve these mysterious accidents that happen whenever someone tries to play a Stradivarius for her grandfather on his birthday. Four incidents have happened on that day already and it is about to come up again.

It is revealed that the house hold are killed off one by one in the order of the C Concert scale.

Conan figures out the object was the real Stradivarius that lured the grandmother to fall to her death.

Kogoro is invited Kagoshima for a variety talk show to promote their local shochu and is later invited by Takakuma Shochu sample their handmade sake.

Conan, Kogoro, and the police continue to search for clues to solving the case. Conan learns more about Tatsumura, the current owner, Satoshi, and the company's history from one of the employees.

The Detective Boys are walking home when they noticed a strange jogger. Takagi, Sato, and Chousuke are placed on the case of a murder. The Detective Boys come across them and identify the jogger as the suspect.

Conan discovers that the suspect tricked Chiba's sense of time.

On a walk with Ran, Conan runs into Takagi who explains that Katsugoro Kitamura, the president of a construction company, is found dead from a stab wound. The suspect, Yuuichi Minamida, is in custody while the police attempt to figure out how the murder was done. The knife angle on the body suggests Kitamura was murdered by someone shorter than him; Minamida is 20 cm taller than Kitamura making it technically impossible.

A motorcyclist crashes outside of Mouri's detective agency. The motorcyclist is dead, but they find a suitcase with 300,000 yen and a note suggesting the money is a ransom drop.

Agasa, Haibara, Conan, Ayumi, Mitsuhiko, and Genta go camping. While they're camping they find a lantern in a pond with some writing inside. They show the stone lantern to Conan who determines that it is a code to finding a large diamond. The lantern is also hiding another secret...a dead body at the bottom of the pond.

Conan, Haibara, and the kids decide to enter the house which belonged to Kichiemon a puppet maker and architect of the riddle.

The sword contains the last clue, which leads everyone back to the pond.

A woman, Fumie Ozawa, is found dead in her bathroom around 9 am, having appeared to have committed suicide by hanging herself with a thin wire, by her friend Etsuko Aikawa who claims it was murder.

A woman named Tomoko Kiriya hires Kogoro to search for her cellphone which contains messages of her affair.

Conan reveals that the person who has the cellphone is obviously inexperienced with one.

Ran turns on Conan's cellphone only to find out there is a four digit lock. She reminisces about the time Shinichi was forming words through the Hiragana and numbers found on the license plates.